1) Yang Yanfang, Zhao Hainan, Roberto A Barrero, Zhang Baohong, Sun Guiling, Wilson Iain W, Xie Fuliang, Walker Kevin D, Parks Joshua W, Bruce Robert, Guo Guangwu, Chen Li, Zhang Yong, Huang Xin, Tang Qi, Liu Hongwei, Bellgard Matthew I, Qiu Deyou*, Lai Jinsheng*, Hoffman Angela*. Genome sequencing and analysis of the paclitaxel-producing endophytic fungus Penicillium aurantiogriseum NRRL 62431. BMC Genomics, 2014, 15: 69.（* 通讯作者）
2) Zhang Nan, Han Zhentai, Sun Guiling, Hoffman Angela, Wilson Iain W, Yang Yanfang, Gao Qian, Wu Jianqiang, Xie Dan, Dai Jungui, Qiu Deyou*. Molecular cloning and characterization of a cytochrome P450 taxoid 9á-hydroxylase in Ginkgo biloba cells. BBRC, 2014, 443: 938-943.（* 通讯作者）
3) Sun Guiling, Yang Yanfang ?, Xie Fuliang, Wen Jianfan, Wu Jianqiang, Wilson Iain W, Tang Qi, Liu Hongwei, Qiu Deyou*. Deep sequencing reveals transcriptome re-programming of Taxus × media cells to the elicitation with methyl jasmonate. PLoS One, 2013, 8(4):e62865 (?共同第一作者).（* 通讯作者）
4) Xie Fuliang, Burklew Caitlin E, Yang Yanfang, Liu Min, Xiao Peng, Zhang Baohong*, Qiu Deyou*. De novo sequencing and a comprehensive analysis of purple sweet potato (Impomoea batatas L.) transcriptome. Planta, 2012，236(1): 101-113.（* 通讯作者）
5) Tang Qi, Su Zhiheng, Ma Xiaojun, Xu Derong, Liang Yanhai, Cao Haibo, Wang Xuesong, Qu Xiaoying, Hoffman Angela*, Liu Honhwei, Gu Dizhou, Qiu Deyou*. LC-MS method for detecting prostratin in plant extracts and identification of a high-yielding population of Euphorbia fischeriana. Phytochemistry Letters, 2012, 1: 214: 218.（* 通讯作者）
6) Tang Qi, Ma Xiaojun*, Mo Changming, Wilson Iain W, Song Cai, Zhao Huan, Yang Yanfang, Fu Wei, Qiu Deyou*. An efficient approach to finding Siraitia grosvenorii triterpene biosynthetic genes by RNA-seq and digital gene expression analysis. BMC Genomics, 2011, 12: 343.（* 通讯作者）
7) Roberto A Barrero, Chapman B, Yang Yanfang, Moolhuijzen P, Keeble-Gagnère G, Zhang Nan, Tang Qi, Bellgard Matthew I*, Qiu Deyou*. De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes. BMC Genomics, 2011, 12: 600.（* 通讯作者）
8) Wang Qiong, Chen Jienan*, Zhang Huaiyun, Lu Mengzhu, Qiu Deyou, Wen Yafeng, Kong Qianqian. Synthesis of Water Soluble Quantum Dots for Monitoring Carrier-DNA Nanoparticles in Plant Cells. Journal of Nanoscience and Nanotechnology, 2011, 11(3): 2208-2214(7). （* 通讯作者）
9) Li Fenglan, Ma Xiaojun, Hu Xinling, Hoffman Angela, Dai Jungui, Qiu Deyou*. Antisense-induced suppression of taxoid 14β-hydroxylase gene expression in transgenic Taxus × media cells. Journal of African Biotechnology, 2011, 10: 8720-8728.（* 通讯作者）
10) Qiu Deyou*, Pan Xiaoping, Wilson Iain W*, Li Fenglan, Liu Min, Teng Wenjing, Zhang Baohong*. High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis). Gene, 2009, 436(1-2):37-44.（* 通讯作者）
11) Qiu Deyou, Wilson Iain W, Gan Siming, Washusen Russell, Moran Gavin F, Southerton Simon G*. Gene expression in Eucalyptus branch wood with marked variation in cellulose microfibril orientation and lacking G-layers. New Phytologist, 2008, 179: 94-103（* 通讯作者）.
12) Spokevicius Antanas V, Southerton Simon G, MacMillan Colleen P, Qiu Deyou, Gan Siming, Tibbits Josquin FG, Moran Gavin F, Bossinger Gerd*. β-tubulin controls cellulose microfibril orientation in plant secondary fibre cell walls. The Plant Journal, 2007, 51(4): 717-726（* 通讯作者）.
13) Ketchum Raymond EB, Horiguchi Tohru, Qiu Deyou, Williams Robert M, Croteau Rodeny B*. Administering cultured Taxus cells with early precursors reveals bifurcations in the taxoid biosynthetic pathway. Phytochemistry, 2007, 68(3):335-341（* 通讯作者）.
14) Ketchum Raymond EB, Rithner Christopher D, Qiu Deyou, Kim Yousun, Williams Robert M, Croteau Rodeny*. Taxus metabolomics: methyl jasmonate preferentially induces taxoids oxygenated at C-13 in Taxus × media cell cultures. Phytochemistry, 2003, 62:901-909（* 通讯作者）.
15) Wang Lida, Qiu Deyou, Chen Jiyun, Han Yifan, Zheng Junhua, Guo De-an*. Callus cultures of Annona squamosa for the production of annonaceous acetogenins. Journal of Asian Natural Products Research, 2002, 4 (3):171-174（* 通讯作者）.
16) Zhang Junzeng, Zhang Lihe, Wang Xihong, Qiu Deyou, Sun Dian, Gu Jianqiao, Fang Qicheng*. Microbial transformation of 10-deacetyl-7-epitaxol and 1β-hydroxybaccatin I by some fungi from the inner bark of Taxus yunnanensis, Journal of Natural Products, 1998, 61: 497-500.（* 通讯作者）.
17) Zhang Junzeng, Tu Fu, Zhang Lihe*, Qiu Deyou. The Epimerization of 10-Deacetylbaccatin Ⅲ by Microsphaeropsis Onychiuri a Fungus from Taxus Yunnanensis. Chinese Chemical Letters, 1997, 8(1): 47-48（* 通讯作者）.
18) 刘洪伟，唐其，杨艳芳，张楠，邱德有*. 从狼毒大戟中克隆蓖麻烯合成酶基因。分子植物育种，2012，10(1):62-66（* 通讯作者）
19) 许德荣,唐其,梁延海,曹海波,王雪松,赵厚坤,李云龙,刘光,刘官久,邱德有*. 狼毒大戟cDNA文库构建及EST测序。分子植物育种，2010,10(1):139-144（* 通讯作者）
20) 刘敏,滕文静,董清华,晁慧娟,李凤岚,邱德有*. 草莓果实外源基因瞬时表达系统的建立. 果树学报，2009，26（1）：60-65（* 通讯作者）
21) 李凤岚,邱德有*,马小军,刘敏,许德荣. 利用RNAi抑制曼地亚红豆杉细胞紫杉烷14β-羟基化酶基因的表达。 中国生物工程杂志，2009，5: 55-60（* 通讯作者）
22) 滕文静,胡新玲,王伟,程克棣,邱德有*. 紫杉烷13α-羟基化酶基因的克隆及其转化烟草的研究。中国生物工程杂志,2008,28(2):53-58（* 通讯作者）
23) 王学勇,崔光红,黄璐琦*,邱德有. 诱导子对丹参毛状根中丹参酮类成分积累影响. 中国中药杂志,2007,32（10）：976-978（* 通讯作者）.
24) 王学勇,崔光红,黄璐琦*,邱德有. 茉莉酸甲酯对丹参毛状根中丹参酮类成分积累和释放的影响. 中国中药杂志,2007,32（4）:300-302（* 通讯作者）.
25) 毛莹,崔光红,黄璐琦*,邱德有,刘娟. 铜、锌离子影响丹参金属硫蛋白MT2基因表达. 分子植物育种,2007,5(3):389-392（* 通讯作者）.
26) 崔光红, 黄璐琦*,唐晓晶,邱德有,王学勇,付桂芳. 丹参功能基因组学研究Ⅰ—cDNA芯片的构建. 中国中药杂志,2007, 32（12）：1137-1141（* 通讯作者）.
27) 崔光红,黄璐琦*,邱德有,袁媛,付桂芳.丹参功能基因组学研究Ⅱ—丹参毛状根不同时期基因表达谱分析. 中国中药杂志, 2007, 32(13)：1267-1272（* 通讯作者）.
28) 金晓磊,沈元月,胡新玲,滕文静,董清华,邱德有*. 草莓基因工程研究进展. 果树学报,2007,24(4):506-512（* 通讯作者）.
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