近年代表性论文：
[1] Mengjiao Chen, Weijuan Fan, Feiyang Ji, Hua Hua, Jie Liu, Mengxiao Yan, Qingguo Ma, Jiongjiong Fan, Qin Wang, Shufeng Zhang, Guiling Liu, Zhe Sun, Changgeng Tian, Fengling Zhao, Jianli Zheng, Qi Zhang, Jiaxin Chen, Jie Qiu, Xin Wei, Ziru Chen, Peng Zhang*, Dong Pei*, Jun Yang*, Xuehui Huang*. Genome-wide identification of agronomically important genes in outcrossing crops using OutcrossSeq. Molecular Plant, 2021, 14(4): 556~570.
[2] Ruimin Huang, Ye Zhou, Junpei Zhang, Feiyang Ji, Feng Jin, Wei Fan, Dong Pei*. Transcriptome analysis of walnut (Juglans regia L.) embryos reveals key developmental stages and genes involved in lipid biosynthesis and polyunsaturated fatty acid metabolism. Journal of Agricultural and Food Chemistry, 2021, 69(1): 377~396.
[3] Junpei Zhang, Wenting Zhang, Feiyang Ji, Jie Qiu, Xiaobo Song, Dechao Bu, Gang Pan, Qingguo Ma, Jiaxin Chen, Ruimin Huang, Yingying Chang, Dong Pei *. A high‐quality walnut genome assembly reveals extensive gene expression divergences after whole‐genome duplication[J]. Plant Biotechnology Journal, 2020, 18(9): 1848~1850.
[4] YongChao Bai, YingYing Chang, Muzammil Hussain, Bin Lu, JunPei Zhang, XiaoBo Song, XiaShuo Lei, Dong Pei*. Soil chemical and microbiological properties are changed by long-term chemical fertilizers that limit ecosystem functioning[J]. Microorganisms, 2020, 8(5): 694.
[5] Lingna Chen, Runquan Dong, Qingguo Ma, Yu Zhang, Shizhong Xu, Delu Ning, Qin Chen, Dong Pei*. Precocious genotypes and homozygous tendency generated by self-pollination in walnut[J]. BMC Plant Biology, 2018, 18(1): 323.
[6] Hao Liu, Ying Gao, Xiaobo Song, Qingguo Ma, Junpei Zhang, Dong Pei*. A novel rejuvenation approach to induce endohormones and improve rhizogenesis in mature Juglans tree[J]. Plant Methods, 2018, 14(1): 13.
[7] Hua Wang, Gang Pan, Qingguo Ma, Junpei Zhang, Dong Pei*. The genetic diversity and introgression of Juglans regia and Juglans sigillata in Tibet as revealed by SSR markers[J]. Tree Genetics & Genomes, 2015, 11(1): 804.
[8] 宋晓波，常英英，刘昊，徐慧敏，裴东*. 核桃不定根发生阶段内参基因筛选与关键基因表达分析[J]. 园艺学报，2019, 46(10): 1907~1918.
[9] 周乃富，张俊佩，刘昊，查巍巍，裴东*. 木本植物非均质化组织石蜡切片制作方法[J]. 植物学报，2018, 53(05): 653~660.
[10] 张俊佩，王滋，周贤武，赵荣军，徐慧鸽，贾志明，裴东*. 不同品系美国黑核桃木材物理力学性质的差异[J]. 林业科学，2016, 52(6): 108~114.

出版著作：
[1] 裴东，鲁新政 主编. 中国核桃种质资源[M]. 北京：中国林业出版社，2011.
[2] 张志华，裴东 主编. 核桃学[M]. 北京：中国农业出版社，2018.
[3] 裴东 著. 核桃等树种不定根发生及其无性繁殖[M]. 北京：中国环境出版社，2009.