(#为第一作者，*为通讯作者)
1) Liyang Yu#, Songfeng Diao#, Guoyun Zhang#, Jiguo Yu, Hongmei Luo, Aiguo Duan, Jinpeng Wang*, Caiyun He*, Jianguo Zhang*. Genome sequence and population genomics provide insights into chromosomal evolution and phytochemical innovation of Hippophae rhamnoides, Plant Biotechnology Journal, 2022. doi: 10.1111/pbi.13802.
2) Zhongrui Lyu#, Guoyun Zhang#, Yating Song, Songfeng Diao, Caiyun He*, Jianguo Zhang*. Transcriptome and DNA methylome provide insights into the molecular regulation of drought stress in sea buckthorn, Genomics, 2022, 114(3):110345.
3) Guoyun Zhang, Songfeng Diao, Yating Song, Caiyun He*, Jianguo Zhang*. Genome-wide DNA N6-adenine methylation in sea buckthorn (Hippophae rhamnoides L.) fruit development, Tree Physiology, 2022, 42 (6): 1286–1295
4) Liyang Yu, Zhongrui Lyu, Hong Liu, Guoyun Zhang, Caiyun He*, Jianguo Zhang*. Insights into the evolutionary origin and expansion of the BBX gene family. Plant Biotechnology Reports, 2022, 16(2): 205-214.
5) Guoyun Zhang, Zhongrui Lyu, Songfeng Diao, Hong Liu, Aiguo Duan, Caiyun He*, Jianguo Zhang*. Unique features of the m6A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoides Linn.), RNA biology, 2021, 18(sup2)：794-803
6) Guori Gao#, Zhongrui Lv#, Guoyun Zhang, Jiayi Li, Jianguo Zhang*, Caiyun He*. An ABA-flavonoid relationship contributes to the differences in drought resistance between different sea buckthorn subspecies, Tree Physiology, 2021, 41, 744–755.
7) Liyang Yu, Guoyun Zhang, Zhongrui Lyu, Caiyun He*, Jianguo Zhang*. Genome-wide analysis of the GRAS gene family exhibited expansion model and functional differentiation in sea buckthorn (Hippophae rhamnoides L.). Plant Biotechnology Reports, 2021, 15(4): 513-525.
8) Tong Zhang#, Guori Gao#, Juanjuan Liu, Guijuan Yang, Zhongrui Lv, Jianguo, Zhang*, Caiyun He*. Transcripts and ABA-dependent signaling in response to drought stress in Hippophae rhamnoides L, Trees-Structure and Function, 2020, 34:1033-1045
9) Guoyun Zhang, Songfeng Diao, Tong Zhang, Daoguo Chen, Caiyun He*, Jianguo Zhang*. Identification and characterization of circular RNAs during the sea buckthorn fruit development, RNA Biology, 2019, 16(3):354-361
10) Guoyun Zhang, Daoguo Chen, Tong Zhang, Aiguo Duan, Jianguo Zhang*, Caiyun He*，Transcriptomic and functional analyses unveil the role of long non-coding RNAs in anthocyanin biosynthesis during sea buckthorn fruit ripening，DNA Research，2018，25(5), 465-476
11) Guoyun Zhang, Tong Zhang, Juanjuan Liu, Jianguo Zhang*, Caiyun He*，Comprehensive analysis of differentially expressed genes reveals the molecular response to elevated CO2 levels in two sea buckthorn cultivars，Gene，2018,660: 120-127
12) Caiyun He, Guoyun Zhang, Jianguo Zhang*, Yanfei Zeng, Juanjuan Liu，Integrated analysis of multiomic data reveals the role of the antioxidant network in the quality of sea buckthorn berry，The FASEB Journal，2017,31(5):1929-1938
13) Guoyun Zhang, Aiguo Duan, Jianguo Zhang*, Caiyun He*，Genome-wide analysis of long non-coding RNAs at the mature stage of sea buckthorn (Hippophae rhamnoides Linn) fruit，Gene，2017,596: 130-136
14) Caiyun He, Guoyun Zhang, Jianguo Zhang*, Aiguo Duan, Hongmei Luo，Physiological, biochemical, and proteome profiling reveals key pathways underlying the drought-stress responses of Hippophae rhamnoides，Proteomics，2016,16(20): 2688-2697
15) Caiyun He, Guori Gao, Jianguo Zhang*, Aiguo Duan, Hongmei Luo，Proteome profiling reveals insights into cold-tolerant growth in sea buckthorn，Proteome Science，2016,14: 14
16) Caiyun He, Kai Cui, Jianguo Zhang*, Aiguo Duan, Yanfei Zeng. Next-generation sequencing-based mRNA and microRNA expression profiling analysis revealed pathways involved in the rapid growth of developing culms in Moso bamboo, BMC plant biology, 2013, 13:119, doi:10.1186/1471-2229-13-119
17) Kai Cui#, Caiyun He#, Jianguo Zhang*, Aiguo Duan, Yanfei Zeng. Temporal and spatial profiling of internode elongation-associated protein expression in rapidly growing culms of bamboo. Journal of Proteome Research. 2012,11(4): 2492-2507
18) Caiyun He, Kai Cui, Aiguo Duan,Yanfei Zeng, Jianguo Zhang*. Geneme-wide and molecular evolution analysis of the poplar KT/HAK/KUP potassium transporter gene family. Ecology and Evolution, 2012, doi: 10.1002/ece3.299: 1-9
19) Caiyun He, Jianguo Zhang*, Aiguo Duan, Physiological and protein response to drought in four pine seedlings. Silvae Genetica. 2012, 61(3): 93-103
20) Caiyun He#, Shuxing Zheng#, Jianguo Zhang*,Aiguo Duan, Yanfei Zeng, Kai Cui. Clonal reproduction and natural variation of Populus canescens patches. Tree physiology. 2010, 30(11): 1383-1390
21) Caiyun He, Jianguo Zhang*, Aiguo Duan, Shuxing Zheng, Honggang Sun, Lihua Fu.Proteins responding to drought and High- temperature stress in Populus×euramericana cv.“74/76”. Trees: Structure and Function. 2008, 22 (6): 803-813
22) Caiyun He, Jianguo Zhang*, Aiguo Duan, Honggang Sun, Lihua Fu, Shuxing Zheng. Proteins responding to drought and high temperature stress in Pinus armandii Franch. Canadian Journal of Botany. 2007, 85(10): 994-1001
23) Caiyun He, Jianguo Zhang*, Aiguo Duan, Jiyan Yin, Daoshan Zhou. Comparison of Methods for Protein Extraction from Pine Needles, Forestry Studies in China. 2005,7: 20-23
24) 魏继华，李佳益，刘宏，张建国，罗红梅，何彩云*. 沙棘根瘤内生菌株库构建与微生物多样性分析. 浙江农林大学学报，2022, 39(2): 356-363
25) 吕中睿，刘宏，张国昀，于立洋，罗红梅，何彩云*. 沙棘UGT基因家族的全基因组鉴定与表达分析. 林业科学研究，2021, 34(6): 9-19
26) 魏继华,李佳益,何彩云*. 弗兰克氏菌共生固氮与分离培养技术研究进展. 东北农业科学,2021,46(2):56-61
27) 张彤，吕中睿，魏继华，张国昀，罗红梅，何彩云*.不同沙棘品种种子中α-亚麻酸含量差异及相关基因分析. 林业科学研究，2020, 33(4): 1-8
28) 陈道国，张国昀，张彤，张建国，何彩云*. 沙棘浆果中酚类物质含量与自由基清除能力相关分析. 林业科学研究，2019, 32(5): 27-33
29) 高国日，张彤，陈道国，何彩云*. 沙棘H3K9乙酰化修饰全基因组分析. 西北植物学报，2018, 38(2): 0240-0248
30) 高国日，刘娟娟，陈道国，何彩云*. 土壤干旱对2个沙棘品种叶片水势和光合特性的影响. 浙江农林大学学报，2017，34（6）：999-1007
31) 何彩云，李梦颖，罗红梅，高国日，张建国*. 不同沙棘品种抗旱性的比较. 林业科学研究，2015, 28(5):634-639

专著：
1) Jianguo Zhang, Caiyun He, Kai Cui. Advances in proteomics research on forest tree (著). Science Press，2014.12 ISBN：978-7-03-041967-5
2) 张建国，段爱国，何彩云. 森林培育理论与技术进展 (著). 科学出版社，2013.3 ISBN：978-7-03-036779-2
3) 张建国，曾艳飞，何彩云. 新疆杨属植物研究 (著). 中国林业出版社，2014.6 ISBN：978-7-5038-7501-4